SNP Profiles matching ICS 1

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
1._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
2._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
3._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
4._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
5._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
6._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
7._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
8._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
9._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
10._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
11._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
12._PA_70_[PER]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
13._GC-04-053-3-17	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
14._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
15._MARPER_45	TT	AA	GG	CT	-	AA	CC	-	CT	-	AA	AA	-	AG
16._RUQ_847	TT	AG	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
17._RUQ_847	_	AA	GG	CT	_	_	_	TT	_	_	_	_	TT	AG
18._RUQ_817	_	AA	GG	CT	_	_	_	TT	_	_	_	_	TT	AG
19._RUQ_847	TT	AG	GG	CT	TT	AA	CC	TT	CT	CT	AA	AA	TT	AG
20._MARPER_34	TT	AA	GG	TT	-	AA	CC	-	CT	-	AA	AA	-	AG
21._MARPER_55	TT	AA	GG	CT	-	AA	CC	-	CT	-	AA	AA	-	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
1._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
2._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
3._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
4._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
5._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
6._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
7._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
8._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
9._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
10._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
11._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
12._PA_70_[PER]	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
13._GC-04-053-3-17	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
14._ICS_1	TT	AA	GG	TT	CC	_	GT	GG	TT	AC	TT	TT	CC	_
15._MARPER_45	TT	AA	GG	-	CC	-	GT	GG	TT	-	-	TT	CC	AG
16._RUQ_847	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	TT	TT	CC	AG
17._RUQ_847	_	_	_	_	CC	CG	GT	_	TT	AA	TT	TT	CC	AG
18._RUQ_817	_	_	_	_	CC	CG	GT	_	TT	AA	TT	TT	CC	AG
19._RUQ_847	TT	AA	GG	TT	CC	CG	GT	GG	CT	AC	TT	CT	CC	AG
20._MARPER_34	TT	AA	GG	-	CC	-	GT	GG	CT	-	-	CT	CC	AG
21._MARPER_55	TT	AA	GG	-	CC	-	GT	GG	CT	-	-	CT	CC	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
1._ICS_1	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
2._ICS_1	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
3._ICS_1	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
4._ICS_1	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
5._ICS_1	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
6._NA	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
7._NA	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
8._NA	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
9._NA	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
10._NA	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
11._NA	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
12._PA_70_[PER]	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
13._GC-04-053-3-17	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
14._ICS_1	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
15._MARPER_45	GG	-	CT	AG	-	-	-	GT	-	AT	-	X_X	X_X	X_X
16._RUQ_847	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
17._RUQ_847	_	AT	CT	AG	CG	AA	CC	GT	AA	_	_	X_X	X_X	X_X
18._RUQ_817	_	AT	CT	AG	CG	AA	CC	GT	AA	_	_	X_X	X_X	X_X
19._RUQ_847	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X
20._MARPER_34	GG	-	TT	AG	-	-	-	GT	-	AA	-	X_X	X_X	X_X
21._MARPER_55	GG	-	CC	AA	-	-	-	GG	-	AT	-	X_X	X_X	X_X

Input profile: ICS_1

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

1._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

2._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

3._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

4._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

5._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._ICS_1 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._ICS_1 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._ICS_1 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._ICS_1 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._ICS_1 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

11._ICS_1 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

12._PA_70_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

14._ICS_1

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

15._MARPER_45

identical
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 251A

Dapeng Zhang, 2014

16._ICS_1 RUQ_847

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._ICS_1 RUQ_847

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._ICS_5 RUQ_817

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._ICS_1 RUQ_847

94.9 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

20._MARPER_34

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 559

Dapeng Zhang, 2014

21._MARPER_55

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER C 249

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25